1C1D	Oxidoreductase	date	Jul 21, 1999
title	L-Phenylalanine Dehydrogenase Structure In Ternary Complex W And L-Phenylalanine
authors	J.L.Vanhooke, J.B.Thoden
compound		source
Molecule: L-Phenylalanine Dehydrogenase Chain: A Engineered: Yes		Organism_scientific: Rhodococcus Sp. Organism_taxid: 1831 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector: Plasmid Expression_system_plasmid: Pbl-1b
Molecule: L-Phenylalanine Dehydrogenase Chain: B Engineered: Yes		Organism_scientific: Rhodococcus Sp. Organism_taxid: 1831 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector: Plasmid Expression_system_plasmid: Pbl-1b
symmetry	Space Group: P 21 21 21	R_factor 0.193 R_Free 0.238
crystal cell	length a length b length c angle alpha angle beta angle gamma 64.800 110.600 113.300 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.25 Å
ligand	IPA, K, NA, NAI, PHE, PO4	enzyme
related structures	by homologous chain: 1C1X
Gene Ontology	Chain Function Process Component A, B
Primary reference	Rhodococcus L-phenylalanine dehydrogenase: kinetics, mechanism, and structural basis for catalytic specificity., Brunhuber NM, Thoden JB, Blanchard JS, Vanhooke JL, Biochemistry 2000 Aug 8;39(31):9174-87. PMID:10924111

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (128 Kb) [Save to disk] Biological Unit Coordinates (1c1d.pdb1.gz) 122 Kb LPC: Ligand-Protein Contacts for 1C1D CSU: Contacts of Structural Units for 1C1D Likely Quarternary Molecular Structure file(s) for 1C1D Retrieve 1C1D in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1C1D from S2C, [Save to disk]

View 1C1D in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1C1D

Ramachandran plot from PDBSum

Structure-derived information

Conformational Epitope Prediction for 1C1D 1C1DA 1C1DB from the CEP Server. Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1C1D, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1c1da2, region A:1-148 [Jmol] [rasmolscript] [script source]     - Domain d1c1da1, region A:149-349 [Jmol] [rasmolscript] [script source]     - Domain d1c1db2, region B:1-148 [Jmol] [rasmolscript] [script source]     - Domain d1c1db1, region B:149-348 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1c1d] [1c1d_A] [1c1d_B] SWISS-PROT database: [Q59771] Domain organization of [Q59771_RHOSO] by SWISSPFAM Domain found in 1C1D: [ELFV_dehydrog ] by SMART

Other resources with information on 1C1D

Community annotation for 1C1D at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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