2C9A Hydrolase date Dec 09, 2005
title Crystal Structure Of The Mam-Ig Module Of Receptor Protein T Phosphatase Mu
authors A.R.Aricescu, W.C.Hon, C.Siebold, W.Lu, P.A.Van Der Merwe, E.Y.Jo
compound source
Molecule: Receptor-Type Tyrosine-Protein Phosphatase Mu
Chain: A
Fragment: Mam-Ig Module Residues 21-279
Synonym: Receptor Protein Tyrosine Phosphatase Mu, R-Ptp-Mu
Ec: 3.1.3.48
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Hek-293t
Expression_system_plasmid: Phl
symmetry Space Group: I 2 2 2
R_factor 0.222 R_Free 0.275
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.856 97.737 134.357 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand FUC, MAN, MSE, NA, NAG enzyme Hydrolase E.C.3.1.3.48 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMolecular analysis of receptor protein tyrosine phosphatase mu-mediated cell adhesion., Aricescu AR, Hon WC, Siebold C, Lu W, van der Merwe PA, Jones EY, EMBO J. 2006 Feb 22;25(4):701-12. Epub 2006 Feb 2. PMID:16456543
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • Biological Unit Coordinates (2c9a.pdb1.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 2C9A
  • CSU: Contacts of Structural Units for 2C9A
  • Likely Quarternary Molecular Structure file(s) for 2C9A
  • Structure Factors (86 Kb)
  • Retrieve 2C9A in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2C9A from S2C, [Save to disk]
  • Re-refined 2c9a structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2C9A in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2C9A
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2C9A, from MSDmotif at EBI
  • Fold representative 2c9a from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2c9a_A] [2c9a]
  • SWISS-PROT database: [P28827]
  • Domain organization of [PTPRM_HUMAN] by SWISSPFAM
  • Domains found in 2C9A: [IG] [MAM ] by SMART
  • Other resources with information on 2C9A
  • Community annotation for 2C9A at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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