2DVY date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
Primary referenceNovel protein fold discovered in the PabI family of restriction enzymes., Miyazono K, Watanabe M, Kosinski J, Ishikawa K, Kamo M, Sawasaki T, Nagata K, Bujnicki JM, Endo Y, Tanokura M, Kobayashi I, Nucleic Acids Res. 2007;35(6):1908-18. Epub 2007 Mar 1. PMID:17332011
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (216 Kb) [Save to disk]
  • Biological Unit Coordinates (2dvy.pdb1.gz) 73 Kb
  • Biological Unit Coordinates (2dvy.pdb2.gz) 72 Kb
  • Biological Unit Coordinates (2dvy.pdb3.gz) 72 Kb
  • Biological Unit Coordinates (2dvy.pdb4.gz) 142 Kb
  • CSU: Contacts of Structural Units for 2DVY
  • Likely Quarternary Molecular Structure file(s) for 2DVY
  • Structure Factors (790 Kb)
  • Retrieve 2DVY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DVY from S2C, [Save to disk]
  • Re-refined 2dvy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2DVY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2dvy] [2dvy_A] [2dvy_B] [2dvy_C] [2dvy_D] [2dvy_E] [2dvy_F]
  • SWISS-PROT database: [Q9V2B6]

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