2GPP Transcription date Apr 18, 2006
title Estrogen Related Receptor-Gamma Ligand Binding Domain Complexed With A Rip140 Peptide And Synthetic Ligand Gsk4716
authors L.Wang, W.J.Zuercher, T.G.Consler, M.H.Lambert, A.B.Miller, L.A.Osband-Miller, D.D.Mckee, T.M.Willson, R.T.Nolte
compound source
Molecule: Estrogen-Related Receptor Gamma
Chain: A, B
Fragment: Residues (229-458)
Synonym: Estrogen Receptor-Related Protein 3, Err Gamma-2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Esrrg
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Prset

Molecule: Nuclear Receptor-Interacting Protein 1
Chain: C, D
Fragment: Residues (366-390)
Synonym: Nuclear Factor Rip140, Receptor-Interacting Protein 140;
Engineered: Yes

Synthetic: Yes
Other_details: Chemically Synthesized. Occurs Naturally In Humans.
symmetry Space Group: H 3
R_factor 0.232 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
203.810 203.810 53.460 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.60 Å
ligand 1BA enzyme
Primary referenceX-ray crystal structures of the estrogen-related receptor-gamma ligand binding domain in three functional states reveal the molecular basis of small molecule regulation., Wang L, Zuercher WJ, Consler TG, Lambert MH, Miller AB, Orband-Miller LA, McKee DD, Willson TM, Nolte RT, J Biol Chem. 2006 Dec 8;281(49):37773-81. Epub 2006 Sep 21. PMID:16990259
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (82 Kb) [Save to disk]
  • Biological Unit Coordinates (2gpp.pdb1.gz) 77 Kb
  • LPC: Ligand-Protein Contacts for 2GPP
  • CSU: Contacts of Structural Units for 2GPP
  • Likely Quarternary Molecular Structure file(s) for 2GPP
  • Structure Factors (214 Kb)
  • Retrieve 2GPP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GPP from S2C, [Save to disk]
  • Re-refined 2gpp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2GPP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2GPP
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2GPP, from MSDmotif at EBI
  • Fold representative 2gpp from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gpp_D] [2gpp_A] [2gpp_C] [2gpp] [2gpp_B]
  • SWISS-PROT database: [P62508] [P48552]
  • Domain organization of [ERR3_HUMAN] [NRIP1_HUMAN] by SWISSPFAM
  • Domain found in 2GPP: [HOLI ] by SMART
  • Other resources with information on 2GPP
  • Community annotation for 2GPP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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