2IMT Apoptosis date Oct 04, 2006
title The X-Ray Structure Of A Bak Homodimer Reveals An Inhibitory Binding Site
authors T.Moldoveanu, Q.Liu, A.Tocilj, M.Watson, G.C.Shore, K.B.Gehring
compound source
Molecule: Apoptosis Regulator Bak
Chain: A
Synonym: Bcl-2 Homologous Antagonistkiller, Bcl-2- Like 7
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bak1, Bak, Bcl2l7
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.193 R_Free 0.220
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.247 53.646 58.074 90.00 114.87 90.00
method X-Ray Diffractionresolution 1.49 Å
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe X-ray structure of a BAK homodimer reveals an inhibitory zinc binding site., Moldoveanu T, Liu Q, Tocilj A, Watson M, Shore G, Gehring K, Mol Cell. 2006 Dec 8;24(5):677-88. PMID:17157251
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (34 Kb) [Save to disk]
  • Biological Unit Coordinates (2imt.pdb1.gz) 57 Kb
  • Biological Unit Coordinates (2imt.pdb2.gz) 29 Kb
  • LPC: Ligand-Protein Contacts for 2IMT
  • CSU: Contacts of Structural Units for 2IMT
  • Likely Quarternary Molecular Structure file(s) for 2IMT
  • Structure Factors (354 Kb)
  • Retrieve 2IMT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2IMT from S2C, [Save to disk]
  • Re-refined 2imt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2IMT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2IMT
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2IMT, from MSDmotif at EBI
  • Fold representative 2imt from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2imt] [2imt_A]
  • SWISS-PROT database: [Q16611]
  • Belongs to the bcl-2 (bcl-2) family according to TCDB.
  • Domain organization of [BAK_HUMAN] by SWISSPFAM
  • Domain found in 2IMT: [BCL ] by SMART
  • Other resources with information on 2IMT
  • Community annotation for 2IMT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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