2J59 Hydrolase date Sep 13, 2006
title Crystal Structure Of The Arf1:Arhgap21-Arfbd Complex
authors J.Menetrey, M.Perderiset, J.Cicolari, T.Dubois, N.El Khatib, F.El Khadali, M.Franco, P.Chavrier, A.Houdusse
compound source
Molecule: Adp-Ribosylation Factor 1
Chain: A, B, C, D, E, F
Fragment: Delta 17-Arf1, Residues 17-180
Synonym: Arf1
Engineered: Yes
Mutation: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Rho-Gtpase Activating Protein 10
Chain: M, N, O, P, Q, R
Fragment: Arf-Binding Domain, Residues 929-1096
Synonym: Rhogap Protein, Arhgap21
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.205 R_Free 0.243
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.636 132.136 146.283 90.00 90.01 90.00
method X-Ray Diffractionresolution 2.1 Å
ligand DIO, EDO, GTP, MG, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, C, D
  • phospholipase D activator ac...


  • O, N, P, Q, M, R


    Primary referenceStructural basis for ARF1-mediated recruitment of ARHGAP21 to Golgi membranes., Menetrey J, Perderiset M, Cicolari J, Dubois T, Elkhatib N, El Khadali F, Franco M, Chavrier P, Houdusse A, EMBO J. 2007 Apr 4;26(7):1953-62. Epub 2007 Mar 8. PMID:17347647
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (322 Kb) [Save to disk]
  • Biological Unit Coordinates (2j59.pdb1.gz) 58 Kb
  • Biological Unit Coordinates (2j59.pdb2.gz) 57 Kb
  • Biological Unit Coordinates (2j59.pdb3.gz) 57 Kb
  • Biological Unit Coordinates (2j59.pdb4.gz) 58 Kb
  • Biological Unit Coordinates (2j59.pdb5.gz) 56 Kb
  • Biological Unit Coordinates (2j59.pdb6.gz) 56 Kb
  • LPC: Ligand-Protein Contacts for 2J59
  • CSU: Contacts of Structural Units for 2J59
  • Likely Quarternary Molecular Structure file(s) for 2J59
  • Structure Factors (2361 Kb)
  • Retrieve 2J59 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2J59 from S2C, [Save to disk]
  • Re-refined 2j59 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2J59 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2J59
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2J59, from MSDmotif at EBI
  • Fold representative 2j59 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2j59_D] [2j59_C] [2j59_O] [2j59_M] [2j59_Q] [2j59_F] [2j59_R] [2j59] [2j59_A] [2j59_B] [2j59_E] [2j59_P] [2j59_N]
  • SWISS-PROT database: [P84078] [Q5T5U3]
  • Domain organization of [ARF1_MOUSE] [RHG21_HUMAN] by SWISSPFAM
  • Domains found in 2J59: [ARF] [PH ] by SMART
  • Other resources with information on 2J59
  • Community annotation for 2J59 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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