2LVM Cell Cycle date Jul 07, 2012
title Solution Structure Of Human 53bp1 Tandem Tudor Domains In Co A Histone H4k20me2 Peptide
authors G.Cui, M.Botuyan, G.Mer
compound source
Molecule: Tumor Suppressor P53-Binding Protein 1
Chain: A
Fragment: Unp Residues 1484-1603
Synonym: 53bp1, P53-Binding Protein 1, P53bp1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tp53bp1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Ptev

Molecule: Histone H4
Chain: B
Fragment: Unp Residues 15-28
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Pgb1
methodSolution NMR
ligand MLY enzyme
Primary referenceAcetylation limits 53BP1 association with damaged chromatin to promote homologous recombination., Tang J, Cho NW, Cui G, Manion EM, Shanbhag NM, Botuyan MV, Mer G, Greenberg RA, Nat Struct Mol Biol. 2013 Feb 3. doi: 10.1038/nsmb.2499. PMID:23377543
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (735 Kb) [Save to disk]
  • Biological Unit Coordinates (2lvm.pdb1.gz) 38 Kb
  • LPC: Ligand-Protein Contacts for 2LVM
  • CSU: Contacts of Structural Units for 2LVM
  • Original NMR restraints for 2LVM from PDB
  • Retrieve 2LVM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2LVM from S2C, [Save to disk]
  • View 2LVM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2LVM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2LVM, from MSDmotif at EBI
  • Fold representative 2lvm from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2lvm_A] [2lvm] [2lvm_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2LVM
  • Community annotation for 2LVM at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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