2V4M Transferase date Sep 26, 2008
title The Isomerase Domain Of Human Glutamine-Fructose-6-Phosphate Transaminase 1 (Gfpt1) In Complex With Fructose 6-Phosphate
authors M.Moche, L.Lehtio, J.Andersson, C.H.Arrowsmith, H.Berglund, R.Col L.G.Dahlgren, A.M.Edwards, S.Flodin, A.Flores, S.Graslund, M.Ham A.Johansson, I.Johansson, T.Karlberg, T.Kotenyova, M.E.Nilsson, C.Persson, J.Sagemark, S.Svensson, H.Schueler, A.G.Thorsell, L.Tresaugues, J.Uppenberg, S.Van Den Berg, M.Welin, M.Wisniewsk J.Weigelt, P.Nordlund, M.Wikstrom
compound source
Molecule: Glucosamine--Fructose-6-Phosphate Aminotransferas [Isomerizing] 1;
Chain: A, B, C, D
Fragment: Each Subunit Has Two Sis Domains, Residues 332-69
Synonym: Isomerase Domain Of Glutamine-Fructose-6-Phosphate Transaminase 1, D-Fructose-6-Phosphate Amidotransferase 1, Hexosephosphate Aminotransferase 1, Gfat 1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: H 3
R_factor 0.167 R_Free 0.185
length a length b length c angle alpha angle beta angle gamma
178.824 178.824 157.113 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.29 Å
ligand CL, F6R enzyme Transferase E.C. BRENDA
A, D, C, B

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (232 Kb) [Save to disk]
  • Biological Unit Coordinates (2v4m.pdb1.gz) 114 Kb
  • Biological Unit Coordinates (2v4m.pdb2.gz) 116 Kb
  • LPC: Ligand-Protein Contacts for 2V4M
  • CSU: Contacts of Structural Units for 2V4M
  • Likely Quarternary Molecular Structure file(s) for 2V4M
  • Structure Factors (1219 Kb)
  • Retrieve 2V4M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2V4M from S2C, [Save to disk]
  • Re-refined 2v4m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2V4M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2V4M
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2V4M, from MSDmotif at EBI
  • Fold representative 2v4m from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2v4m_D] [2v4m] [2v4m_B] [2v4m_A] [2v4m_C]
  • SWISS-PROT database: [Q06210]
  • Domain organization of [GFPT1_HUMAN] by SWISSPFAM
  • Other resources with information on 2V4M
  • Community annotation for 2V4M at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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