2V6E Hydrolase date Jul 17, 2007
title Protelomerase Telk Complexed With Substrate Dna
authors H.Aihara, W.M.Huang, T.Ellenberger
compound source
Molecule: Protelemorase
Chain: A, B
Fragment: C-Terminally Truncated Active Resolvase, Residues 1-538;
Synonym: Protelomerase Telk538
Engineered: Yes
Organism_scientific: Klebsiella Phage Phiko2
Organism_taxid: 255431
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_plasmid: Pbad

Molecule: Telrl
Chain: C, E
Other_details: Target Site For Telk

Synthetic: Yes
Organism_scientific: Phage N15
Organism_taxid: 40631

Molecule: Telrl
Chain: D, F
Other_details: Target Site For Telk

Synthetic: Yes
Organism_scientific: Phage N15
Organism_taxid: 40631
symmetry Space Group: P 41
R_factor 0.2554 R_Free 0.2860
length a length b length c angle alpha angle beta angle gamma
157.973 157.973 90.842 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.20 Å
ligand VO4 enzyme
Primary referenceAn Interlocked Dimer of the Protelomerase TelK Distorts DNA Structure for the Formation of Hairpin Telomeres., Aihara H, Huang WM, Ellenberger T, Mol Cell. 2007 Sep 21;27(6):901-13. PMID:17889664
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (210 Kb) [Save to disk]
  • Biological Unit Coordinates (2v6e.pdb1.gz) 203 Kb
  • LPC: Ligand-Protein Contacts for 2V6E
  • CSU: Contacts of Structural Units for 2V6E
  • Likely Quarternary Molecular Structure file(s) for 2V6E
  • Structure Factors (364 Kb)
  • Retrieve 2V6E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2V6E from S2C, [Save to disk]
  • Re-refined 2v6e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2V6E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2V6E
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2V6E, from MSDmotif at EBI
  • Fold representative 2v6e from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2v6e_B] [2v6e_A] [2v6e_C] [2v6e_D] [2v6e_E] [2v6e_F] [2v6e]
  • SWISS-PROT database: [Q6UAV6]
  • Domain organization of [Q6UAV6_9CAUD] by SWISSPFAM
  • Other resources with information on 2V6E
  • Community annotation for 2V6E at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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