2VUT Crystal structure of NAD-bound NmrA-AreA zinc finger complex date
authors Kotaka, M., Johnson, C., Lamb, H.K., Hawkins, A.R., Ren, J., Stammers, D.K.
compound source
symmetry
R_factor
R_Free 0.274
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.30
ligand CL, GOL, NAD, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, E, C, A, B, H, D, G


N, K, M, L, J, O, P, I


Primary referenceStructural analysis of the recognition of the negative regulator NmrA and DNA by the zinc finger from the GATA-type transcription factor AreA., Kotaka M, Johnson C, Lamb HK, Hawkins AR, Ren J, Stammers DK, J Mol Biol. 2008 Aug 29;381(2):373-82. Epub 2008 Jun 5. PMID:18602114
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (525 Kb) [Save to disk]
  • Biological Unit Coordinates (2vut.pdb1.gz) 70 Kb
  • Biological Unit Coordinates (2vut.pdb2.gz) 71 Kb
  • Biological Unit Coordinates (2vut.pdb3.gz) 70 Kb
  • Biological Unit Coordinates (2vut.pdb4.gz) 71 Kb
  • Biological Unit Coordinates (2vut.pdb5.gz) 71 Kb
  • Biological Unit Coordinates (2vut.pdb6.gz) 71 Kb
  • Biological Unit Coordinates (2vut.pdb7.gz) 71 Kb
  • Biological Unit Coordinates (2vut.pdb8.gz) 71 Kb
  • Biological Unit Coordinates (2vut.pdb9.gz) 63 Kb
  • LPC: Ligand-Protein Contacts for 2VUT
  • CSU: Contacts of Structural Units for 2VUT
  • Likely Quarternary Molecular Structure file(s) for 2VUT
  • Structure Factors (1397 Kb)
  • Retrieve 2VUT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VUT from S2C, [Save to disk]
  • Re-refined 2vut structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2VUT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2VUT
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2VUT, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vut_O] [2vut_L] [2vut] [2vut_M] [2vut_I] [2vut_A] [2vut_J] [2vut_H] [2vut_E] [2vut_D] [2vut_F] [2vut_N] [2vut_C] [2vut_P] [2vut_B] [2vut_K] [2vut_G]
  • SWISS-PROT database: [P17429] [O59919]
  • Domain organization of [AREA_EMENI] [O59919_EMENI] by SWISSPFAM
  • Domain found in 2VUT: [ZnF_GATA ] by SMART
    • Other resources with information on 2VUT
  • Community annotation for 2VUT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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