2VUU Crystal structure of NADP-bound NmrA-AreA zinc finger complex date
authors Kotaka, M., Johnson, C., Lamb, H.K., Hawkins, A.R., Ren, J., Stammers, D.K.
compound source
symmetry
R_factor
R_Free 0.287
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.80
ligand NAP, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, E, C, A, B, H, D, G


N, K, M, L, J, O, P, I


Primary referenceStructural analysis of the recognition of the negative regulator NmrA and DNA by the zinc finger from the GATA-type transcription factor AreA., Kotaka M, Johnson C, Lamb HK, Hawkins AR, Ren J, Stammers DK, J Mol Biol. 2008 Aug 29;381(2):373-82. Epub 2008 Jun 5. PMID:18602114
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (492 Kb) [Save to disk]
  • Biological Unit Coordinates (2vuu.pdb1.gz) 66 Kb
  • Biological Unit Coordinates (2vuu.pdb2.gz) 66 Kb
  • Biological Unit Coordinates (2vuu.pdb3.gz) 66 Kb
  • Biological Unit Coordinates (2vuu.pdb4.gz) 66 Kb
  • Biological Unit Coordinates (2vuu.pdb5.gz) 66 Kb
  • Biological Unit Coordinates (2vuu.pdb6.gz) 66 Kb
  • Biological Unit Coordinates (2vuu.pdb7.gz) 66 Kb
  • Biological Unit Coordinates (2vuu.pdb8.gz) 66 Kb
  • Biological Unit Coordinates (2vuu.pdb9.gz) 60 Kb
  • LPC: Ligand-Protein Contacts for 2VUU
  • CSU: Contacts of Structural Units for 2VUU
  • Likely Quarternary Molecular Structure file(s) for 2VUU
  • Structure Factors (824 Kb)
  • Retrieve 2VUU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VUU from S2C, [Save to disk]
  • Re-refined 2vuu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2VUU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2VUU
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2VUU, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vuu_P] [2vuu_B] [2vuu_C] [2vuu_D] [2vuu_E] [2vuu_O] [2vuu_M] [2vuu_K] [2vuu_A] [2vuu_L] [2vuu_N] [2vuu_J] [2vuu_I] [2vuu_H] [2vuu_F] [2vuu_G] [2vuu]
  • SWISS-PROT database: [P17429] [O59919]
  • Domain organization of [AREA_EMENI] [O59919_EMENI] by SWISSPFAM
  • Domain found in 2VUU: [ZnF_GATA ] by SMART
    • Other resources with information on 2VUU
  • Community annotation for 2VUU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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