2VUU	Transcription	date	May 30, 2008
title	Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger Comple
authors	M.Kotaka, C.Johnson, H.K.Lamb, A.R.Hawkins, J.Ren, D.K.Stammers
compound		source
Chain: A, B, C, D, E, F, G, H Engineered: Yes		Organism_scientific: Emericella Nidulans Organism_taxid: 162425 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet
Molecule: Nitrogen Regulatory Protein Area Chain: I, J, K, L, M, N, O, P Fragment: Zinc Finger Domain, Residues 670-712 Synonym: Area Engineered: Yes		Organism_scientific: Emericella Nidulans Organism_taxid: 162425 Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet3a
symmetry	Space Group: H 3	R_factor 0.232 R_Free 0.287
crystal cell	length a length b length c angle alpha angle beta angle gamma 231.730 231.730 223.450 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.80 Å
ligand	NAP, ZN	enzyme
Gene Ontology	Chain Function Process Component F, E, C, A, B, H, D, G N, K, M, L, J, O, P, I
Primary reference	Structural analysis of the recognition of the negative regulator NmrA and DNA by the zinc finger from the GATA-type transcription factor AreA., Kotaka M, Johnson C, Lamb HK, Hawkins AR, Ren J, Stammers DK, J Mol Biol. 2008 Aug 29;381(2):373-82. Epub 2008 Jun 5. PMID:18602114

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (483 Kb) [Save to disk] Biological Unit Coordinates (2vuu.pdb1.gz) 65 Kb Biological Unit Coordinates (2vuu.pdb2.gz) 65 Kb Biological Unit Coordinates (2vuu.pdb3.gz) 65 Kb Biological Unit Coordinates (2vuu.pdb4.gz) 65 Kb Biological Unit Coordinates (2vuu.pdb5.gz) 65 Kb Biological Unit Coordinates (2vuu.pdb6.gz) 65 Kb Biological Unit Coordinates (2vuu.pdb7.gz) 65 Kb Biological Unit Coordinates (2vuu.pdb8.gz) 65 Kb Biological Unit Coordinates (2vuu.pdb9.gz) 58 Kb LPC: Ligand-Protein Contacts for 2VUU CSU: Contacts of Structural Units for 2VUU Likely Quarternary Molecular Structure file(s) for 2VUU Structure Factors (824 Kb) Retrieve 2VUU in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2VUU from S2C, [Save to disk] Re-refined 2vuu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2VUU in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2VUU

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2VUU, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2vuu_P] [2vuu_B] [2vuu_C] [2vuu_D] [2vuu_E] [2vuu_O] [2vuu_M] [2vuu_K] [2vuu_A] [2vuu_L] [2vuu_N] [2vuu_J] [2vuu_I] [2vuu_H] [2vuu_F] [2vuu_G] [2vuu] SWISS-PROT database: [P17429] [O59919] Domain organization of [AREA_EMENI] [O59919_EMENI] by SWISSPFAM Domain found in 2VUU: [ZnF_GATA ] by SMART

Other resources with information on 2VUU

Community annotation for 2VUU at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---