2W5A Transferase date Dec 08, 2008
title Human Nek2 Kinase Adp-Bound
authors I.Westwood, R.Bayliss
compound source
Molecule: Serinethreonine-Protein Kinase Nek2
Chain: A
Fragment: Kinase Domain, Residues 1-271
Synonym: Nima-Related Protein Kinase 2, Nima-Like Protein Kinase 1, Hspk 21, Nek2;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pet30
symmetry Space Group: C 1 2 1
R_factor 0.172 R_Free 0.190
length a length b length c angle alpha angle beta angle gamma
99.467 57.103 80.213 90.00 132.99 90.00
method X-Ray Diffractionresolution 1.55 Å
ligand ADP, EDO, MG enzyme Transferase E.C. BRENDA

Primary referenceInsights into the Conformational Variability and Regulation of Human Nek2 Kinase., Westwood I, Cheary DM, Baxter JE, Richards MW, van Montfort RL, Fry AM, Bayliss R, J Mol Biol. 2008 Dec 24. PMID:19124027
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (109 Kb) [Save to disk]
  • Biological Unit Coordinates (2w5a.pdb1.gz) 103 Kb
  • LPC: Ligand-Protein Contacts for 2W5A
  • CSU: Contacts of Structural Units for 2W5A
  • Likely Quarternary Molecular Structure file(s) for 2W5A
  • Structure Factors (1232 Kb)
  • Retrieve 2W5A in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2W5A from S2C, [Save to disk]
  • Re-refined 2w5a structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2W5A in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2W5A
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2W5A, from MSDmotif at EBI
  • Fold representative 2w5a from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2w5a] [2w5a_A]
  • SWISS-PROT database: [P51955]
  • Domain organization of [NEK2_HUMAN] by SWISSPFAM
  • Domain found in 2W5A: [S_TKc ] by SMART
  • Other resources with information on 2W5A
  • Community annotation for 2W5A at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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