OCA Atlas for 2YGV

2YGV

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

GOL, SO4

enzyme

Gene
Ontology

Chain	Function	Process	Component
A, B, C, D

Primary reference

Surprising complexity of the Asf1 histone chaperone-Rad53 kinase interaction., Jiao Y, Seeger K, Lautrette A, Gaubert A, Mousson F, Guerois R, Mann C, Ochsenbein F, Proc Natl Acad Sci U S A. 2012 Feb 21;109(8):2866-71. Epub 2012 Feb 9. PMID:22323608

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (115 Kb) [Save to disk]

Biological Unit Coordinates (2ygv.pdb1.gz) 30 Kb

Biological Unit Coordinates (2ygv.pdb2.gz) 29 Kb

Biological Unit Coordinates (2ygv.pdb3.gz) 29 Kb

Biological Unit Coordinates (2ygv.pdb4.gz) 28 Kb

LPC: Ligand-Protein Contacts for 2YGV

CSU: Contacts of Structural Units for 2YGV

Structure Factors (301 Kb)

Retrieve 2YGV in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 2YGV from S2C, [Save to disk]

Re-refined 2ygv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2YGV in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2ygv] [2ygv_A] [2ygv_B] [2ygv_C] [2ygv_D] [2ygv_E] [2ygv_F] [2ygv_G] [2ygv_H]

SWISS-PROT database:

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