3CM2 Crystal Structure of XIAP BIR3 domain in complex with a Smac-mimetic compound, Smac010 date
authors Cossu, F., Mastrangelo, E., Milani, M.
compound source
symmetry
R_factor
R_Free 0.26379
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.50
ligand X23, ZN BindingDB enzyme
Primary referenceTargeting the X-Linked Inhibitor of Apoptosis Protein through 4-Substituted Azabicyclo[5.3.0]alkane Smac Mimetics. Structure, Activity, and Recognition Principles., Mastrangelo E, Cossu F, Milani M, Sorrentino G, Lecis D, Delia D, Manzoni L, Drago C, Seneci P, Scolastico C, Rizzo V, Bolognesi M, J Mol Biol. 2008 Oct 7. PMID:18851976
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (194 Kb) [Save to disk]
  • Biological Unit Coordinates (3cm2.pdb1.gz) 40 Kb
  • Biological Unit Coordinates (3cm2.pdb2.gz) 39 Kb
  • Biological Unit Coordinates (3cm2.pdb3.gz) 39 Kb
  • Biological Unit Coordinates (3cm2.pdb4.gz) 39 Kb
  • Biological Unit Coordinates (3cm2.pdb5.gz) 39 Kb
  • Biological Unit Coordinates (3cm2.pdb6.gz) 21 Kb
  • Biological Unit Coordinates (3cm2.pdb7.gz) 22 Kb
  • Biological Unit Coordinates (3cm2.pdb8.gz) 21 Kb
  • Biological Unit Coordinates (3cm2.pdb9.gz) 22 Kb
  • LPC: Ligand-Protein Contacts for 3CM2
  • CSU: Contacts of Structural Units for 3CM2
  • Likely Quarternary Molecular Structure file(s) for 3CM2
  • Structure Factors (990 Kb)
  • Retrieve 3CM2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3CM2 from S2C, [Save to disk]
  • Re-refined 3cm2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3CM2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3CM2
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3CM2, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3cm2_B] [3cm2_F] [3cm2_G] [3cm2_D] [3cm2_E] [3cm2_] [3cm2_J] [3cm2_C] [3cm2_H] [3cm2_A] [3cm2] [3cm2_I]
  • SWISS-PROT database: [P98170]
  • Domain organization of [XIAP_HUMAN] by SWISSPFAM
  • Domain found in 3CM2: [BIR ] by SMART
    • Other resources with information on 3CM2
  • Community annotation for 3CM2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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