3DL9 Oxidoreductase date Jun 26, 2008
title Crystal Structure Of Cyp2r1 In Complex With 1-Alpha-Hydroxy-
authors N.V.Strushkevich, W.Tempel, A.A.Gilep, P.Loppnau, C.H.Arrowsmith A.M.Edwards, C.Bountra, M.Wilkstrom, A.Bochkarev, H.Park, Struct Genomics Consortium (Sgc)
compound source
Molecule: Cytochrome P450 2r1
Chain: A, B
Synonym: Vitamin D 25-Hydroxylase
Ec: 1.14.14.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Gene: Cyp2r1
Expression_system: Escherichia Coli
Expression_system_strain: Jm109
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pcw
symmetry Space Group: C 2 2 21
R_factor 0.183 R_Free 0.218
length a length b length c angle alpha angle beta angle gamma
137.303 163.040 152.588 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.72 Å
ligand GLC, HEM, V2H enzyme Oxidoreductase E.C.1.14.14 BRENDA
A, B

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (166 Kb) [Save to disk]
  • Biological Unit Coordinates (3dl9.pdb1.gz) 80 Kb
  • Biological Unit Coordinates (3dl9.pdb2.gz) 80 Kb
  • LPC: Ligand-Protein Contacts for 3DL9
  • CSU: Contacts of Structural Units for 3DL9
  • Likely Quarternary Molecular Structure file(s) for 3DL9
  • Structure Factors (746 Kb)
  • Retrieve 3DL9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DL9 from S2C, [Save to disk]
  • Re-refined 3dl9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3DL9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3DL9
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3DL9, from MSDmotif at EBI
  • Fold representative 3dl9 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3dl9] [3dl9_A] [3dl9_B]
  • SWISS-PROT database: [Q6VVX0]
  • Domain organization of [CP2R1_HUMAN] by SWISSPFAM
  • Other resources with information on 3DL9
  • Community annotation for 3DL9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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