3F7P	Structural Protein Cell Adhesion	date	Nov 10, 2008
title	Crystal Structure Of A Complex Between Integrin Beta4 And Pl
authors	J.M.De Pereda
compound		source
Molecule: Plectin-1 Chain: A, B Fragment: Actin-Binding Domain, Residues 1-293 Synonym: Plectin 1c, Pltn, Pcn, Hemidesmosomal Protein 1, H Plectin-6, Plectin-11; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Plec-1 (Isoform 1c), Plec1 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Derivative Of Pet15b
Molecule: Integrin Beta-4 Chain: C, D, E Fragment: Fibronectin Type-III, Residues 1126-1370 Synonym: Gp150 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Itgb4 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Derivative Of Pet15b
symmetry	Space Group: P 32 2 1	R_factor 0.204 R_Free 0.257
crystal cell	length a length b length c angle alpha angle beta angle gamma 107.250 107.250 203.970 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.75 Å
ligand	CA, EDO, PEG	enzyme
Gene Ontology	Chain Function Process Component A, B D, C, E
Primary reference	Structural basis of the interaction between integrin alpha6beta4 and plectin at the hemidesmosomes., de Pereda JM, Lillo MP, Sonnenberg A, EMBO J. 2009 Feb 26. PMID:19242489

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (369 Kb) [Save to disk] Biological Unit Coordinates (3f7p.pdb1.gz) 148 Kb Biological Unit Coordinates (3f7p.pdb2.gz) 146 Kb Biological Unit Coordinates (3f7p.pdb3.gz) 73 Kb LPC: Ligand-Protein Contacts for 3F7P CSU: Contacts of Structural Units for 3F7P Likely Quarternary Molecular Structure file(s) for 3F7P Structure Factors (289 Kb) Retrieve 3F7P in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3F7P from S2C, [Save to disk] Re-refined 3f7p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3F7P in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3F7P

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3F7P, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3f7p_E] [3f7p_B] [3f7p_A] [3f7p_C] [3f7p] [3f7p_D] SWISS-PROT database: [P16144] [Q15149] Domain organization of [ITB4_HUMAN] [PLEC1_HUMAN] by SWISSPFAM Domains found in 3F7P: [CH] [FN3 ] by SMART

Other resources with information on 3F7P

Community annotation for 3F7P at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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