3HTU	Protein Transport	date	Jun 12, 2009
title	Crystal Structure Of The Human Vps25-Vps20 Subcomplex
authors	Y.J.Im, J.H.Hurley
compound		source
Molecule: Vacuolar Protein-Sorting-Associated Protein 25 Chain: A, C, E, G Fragment: The C-Terminal Wh2 Domain Of Vps25: Unp Residues Synonym: Hvps25, Escrt-II Complex Subunit Vps25, Ell-Associ Protein Of 20 Kda, Dermal Papilla-Derived Protein 9; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Derp9, Eap20, Vps25 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)Star Expression_system_vector_type: Plasmid Expression_system_plasmid: Pst39
Molecule: Vacuolar Protein-Sorting-Associated Protein 20 Chain: B, D, F, H Fragment: The First Helix Of Vps20: Unp Residues 11-48 Synonym: Chromatin-Modifying Protein 6, Charged Multivesicu Protein 6, Vps20, Hvps20; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Chmp6, Vps20 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)Star Expression_system_vector_type: Plasmid Expression_system_plasmid: Pst39
symmetry	Space Group: P 1 21 1	R_factor 0.239 R_Free 0.273
crystal cell	length a length b length c angle alpha angle beta angle gamma 58.562 51.043 76.987 90.00 90.39 90.00
method	X-Ray Diffraction	resolution	2.00 Å
note	3HTU is a representative structure
Gene Ontology	Chain Function Process Component A, C, G, E
Primary reference	Structure and function of the ESCRT-II-III interface in multivesicular body biogenesis., Im YJ, Wollert T, Boura E, Hurley JH, Dev Cell. 2009 Aug;17(2):234-43. PMID:19686684

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (157 Kb) [Save to disk] Biological Unit Coordinates (3htu.pdb1.gz) 39 Kb Biological Unit Coordinates (3htu.pdb2.gz) 40 Kb Biological Unit Coordinates (3htu.pdb3.gz) 38 Kb Biological Unit Coordinates (3htu.pdb4.gz) 40 Kb CSU: Contacts of Structural Units for 3HTU Structure Factors (216 Kb) Retrieve 3HTU in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3HTU from S2C, [Save to disk] Re-refined 3htu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3HTU in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3HTU

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3HTU, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3htu_B] [3htu_F] [3htu_C] [3htu_G] [3htu_D] [3htu_H] [3htu] [3htu_A] [3htu_E] SWISS-PROT database: [Q96FZ7] [Q9BRG1] Domain organization of [CHMP6_HUMAN] [VPS25_HUMAN] by SWISSPFAM

Other resources with information on 3HTU

Community annotation for 3HTU at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---