3J82 Membrane Protein Adp-Binding Protein date Sep 25, 2014
title Electron Cryo-Microscopy Of Dngr-1 In Complex With F-Actin
authors P.Hanc, T.Fujii, Y.Yamada, J.Huotari, O.Schulz, S.Ahrens, S.Kjaer, K.Namba, C.Reis E Sousa
compound source
Molecule: C-Type Lectin Domain Family 9 Member A
Chain: A
Synonym: Dendritic Cell Natural Killer Lectin Group Recepto
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Clec9a, Dngr-1
Expression_system: Homo Sapiens
Expression_system_taxid: 9606

Molecule: Actin, Cytoplasmic 1
Chain: B, C, D
Synonym: Beta-Actin, Actin, Cytoplasmic 1, N-Terminally Pro

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Human Platelet Actin
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 7.70 Å
ligand ADP, CA, HIC enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (175 Kb) [Save to disk]
  • Biological Unit Coordinates (3j82.pdb1.gz) 171 Kb
  • LPC: Ligand-Protein Contacts for 3J82
  • CSU: Contacts of Structural Units for 3J82
  • Retrieve 3J82 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3J82 from S2C, [Save to disk]
  • View 3J82 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3J82
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3J82, from MSDmotif at EBI
  • Fold representative 3j82 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3j82_A] [3j82_B] [3j82_D] [3j82] [3j82_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3J82: [ACTIN] [CLECT ] by SMART
  • Other resources with information on 3J82
  • Community annotation for 3J82 at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science