3MFK Transcription Dna date Apr 02, 2010
title Ets1 Complex With Stromelysin-1 Promoter Dna
authors N.D.Babayeva, K.Mino, T.H.Tahirov
compound source
Molecule: Protein C-Ets-1
Chain: A, B
Fragment: Unp Residues 280-441
Synonym: P54
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ets1, Ewsr2
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pets280-441

Molecule: Stromelysin-1 Promoter Dna
Chain: C
Engineered: Yes
Other_details: Stromelysin-1 Promoter Dna Containing Palind Binding Sequences;

Synthetic: Yes
Other_details: Stromelysin-1 Promoter Dna Sequence

Molecule: Stromelysin-1 Promoter Dna
Chain: D
Engineered: Yes
Other_details: Stromelysin-1 Promoter Dna Containing Palind Binding Sequences

Synthetic: Yes
symmetry Space Group: C 1 2 1
R_factor 0.243 R_Free 0.289
length a length b length c angle alpha angle beta angle gamma
92.812 99.153 76.496 90.00 108.14 90.00
method X-Ray Diffractionresolution 3.00 Å
A, B

Primary referenceStructural basis of Ets1 cooperative binding to palindromic sequences on stromelysin-1 promoter DNA., Babayeva ND, Wilder PJ, Shiina M, Mino K, Desler M, Ogata K, Rizzino A, Tahirov TH, Cell Cycle. 2010 Aug;9(15):3054-62. Epub 2010 Aug 5. PMID:20686355
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk]
  • Biological Unit Coordinates (3mfk.pdb1.gz) 60 Kb
  • CSU: Contacts of Structural Units for 3MFK
  • Structure Factors (190 Kb)
  • Retrieve 3MFK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3MFK from S2C, [Save to disk]
  • Re-refined 3mfk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3MFK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3MFK
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3MFK, from MSDmotif at EBI
  • Fold representative 3mfk from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3mfk_B] [3mfk_A] [3mfk_D] [3mfk] [3mfk_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3MFK: [ETS ] by SMART
  • Other resources with information on 3MFK
  • Community annotation for 3MFK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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