3PE4	Transferase	date	Oct 25, 2010
title	Structure Of Human O-Glcnac Transferase And Its Complex With Substrate
authors	M.B.Lazarus, Y.Nam, J.Jiang, P.Sliz, S.Walker
compound		source
Molecule: Udp-N-Acetylglucosamine--Peptide N- Acetylglucosaminyltransferase 110 Kda Subunit; Chain: A, C Fragment: Hogt4.5, Unp Residues 323-1041 Synonym: O-Glcnac Transferase Subunit P110, O-Linked N- Acetylglucosamine Transferase 110 Kda Subunit; Ec: 2.4.1.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ogt Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Casein Kinase II Subunit Alpha Chain: B, D Fragment: Unp Residues 340-352 Synonym: Ck II Alpha Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Other_details: This Is A Synthetically Made Peptide Of A Se That Occurs Naturally In Humans
symmetry	Space Group: I 1 2 1	R_factor 0.224 R_Free 0.252
crystal cell	length a length b length c angle alpha angle beta angle gamma 98.600 136.700 153.500 90.00 102.90 90.00
method	X-Ray Diffraction	resolution	1.95 Å
ligand	SO4, UDP BindingDB	enzyme	Transferase E.C.2.4.1 BRENDA
note	3PE4 (Molecule of the Month:pdb141)
Gene Ontology	Chain Function Process Component A, C
Primary reference	Structure of human O-GlcNAc transferase and its complex with a peptide substrate., Lazarus MB, Nam Y, Jiang J, Sliz P, Walker S, Nature. 2011 Jan 27;469(7331):564-7. Epub 2011 Jan 16. PMID:21240259

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (466 Kb) [Save to disk] Biological Unit Coordinates (3pe4.pdb1.gz) 234 Kb Biological Unit Coordinates (3pe4.pdb2.gz) 227 Kb Biological Unit Coordinates (3pe4.pdb3.gz) 465 Kb Biological Unit Coordinates (3pe4.pdb4.gz) 450 Kb LPC: Ligand-Protein Contacts for 3PE4 CSU: Contacts of Structural Units for 3PE4 Structure Factors (1170 Kb) Retrieve 3PE4 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3PE4 from S2C, [Save to disk] Re-refined 3pe4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3PE4 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3PE4

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3PE4, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3pe4_C] [3pe4_D] [3pe4_B] [3pe4] [3pe4_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3PE4: [TPR ] by SMART

Other resources with information on 3PE4

Community annotation for 3PE4 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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