OCA Atlas for 3PKJ

3PKJ

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

A2N, SO4, UNX, ZN

enzyme

Gene
Ontology

Chain	Function	Process	Component
C, B, E, A, F, D	NAD-dependent histone deacet...

Primary reference

Structure and biochemical functions of SIRT6., Pan PW, Feldman JL, Devries MK, Dong A, Edwards AM, Denu JM, J Biol Chem. 2011 Apr 22;286(16):14575-87. Epub 2011 Mar 1. PMID:21362626

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (271 Kb) [Save to disk]

Biological Unit Coordinates (3pkj.pdb1.gz) 47 Kb

Biological Unit Coordinates (3pkj.pdb2.gz) 49 Kb

Biological Unit Coordinates (3pkj.pdb3.gz) 48 Kb

Biological Unit Coordinates (3pkj.pdb4.gz) 48 Kb

Biological Unit Coordinates (3pkj.pdb5.gz) 48 Kb

Biological Unit Coordinates (3pkj.pdb6.gz) 47 Kb

Biological Unit Coordinates (3pkj.pdb7.gz) 264 Kb

LPC: Ligand-Protein Contacts for 3PKJ

CSU: Contacts of Structural Units for 3PKJ

Structure Factors (2106 Kb)

Retrieve 3PKJ in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3PKJ from S2C, [Save to disk]

Re-refined 3pkj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3PKJ in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3pkj] [3pkj_A] [3pkj_B] [3pkj_C] [3pkj_D] [3pkj_E] [3pkj_F]

SWISS-PROT database:

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