3PLZ	Transcription Receptor Agonist	date	Nov 15, 2010
title	Human Lrh1 Lbd Bound To Gr470
authors	S.P.Williams, R.Xu, W.J.Zuercher
compound		source
Molecule: Ftz-F1 Related Protein Chain: A, B Fragment: Unp Residues 300-541 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Nr5a2 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Plrh1_lbd
Molecule: Nuclear Receptor Coactivator 2 Chain: C, D Fragment: Unp Residues 740-753 Synonym: Ncoa-2, Class E Basic Helix-Loop-Helix Protein 75, Transcriptional Intermediary Factor 2, Htif2; Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Other_details: This Sequence Occurs Naturally In Humans
symmetry	Space Group: P 1 21 1	R_factor 0.185 R_Free 0.214
crystal cell	length a length b length c angle alpha angle beta angle gamma 52.667 89.054 65.453 90.00 101.71 90.00
method	X-Ray Diffraction	resolution	1.75 Å
ligand	470, EDO BindingDB	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Small Molecule Agonists of the Orphan Nuclear Receptors Steroidogenic Factor-1 (SF-1, NR5A1) and Liver Receptor Homologue-1 (LRH-1, NR5A2)., Whitby RJ, Stec J, Blind RD, Dixon S, Leesnitzer LM, Orband-Miller LA, Williams SP, Willson TM, Xu R, Zuercher WJ, Cai F, Ingraham HA, J Med Chem. 2011 Mar 10. PMID:21391689

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (91 Kb) [Save to disk] Biological Unit Coordinates (3plz.pdb1.gz) 43 Kb Biological Unit Coordinates (3plz.pdb2.gz) 44 Kb LPC: Ligand-Protein Contacts for 3PLZ CSU: Contacts of Structural Units for 3PLZ Structure Factors (1189 Kb) Retrieve 3PLZ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3PLZ from S2C, [Save to disk] Re-refined 3plz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3PLZ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3PLZ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3PLZ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3plz_B] [3plz_D] [3plz] [3plz_C] [3plz_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3PLZ: [HOLI ] by SMART

Other resources with information on 3PLZ

Community annotation for 3PLZ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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