3R8F date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand ACP, MG enzyme
note 3R8F (Molecule of the Month:pdb168)
Gene AQ
Gene
Ontology
ChainFunctionProcessComponent
A, B, C, D


Primary referenceDNA stretching by bacterial initiators promotes replication origin opening., Duderstadt KE, Chuang K, Berger JM, Nature. 2011 Oct 2;478(7368):209-13. doi: 10.1038/nature10455. PMID:21964332
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (460 Kb) [Save to disk]
  • Biological Unit Coordinates (3r8f.pdb1.gz) 453 Kb
  • LPC: Ligand-Protein Contacts for 3R8F
  • CSU: Contacts of Structural Units for 3R8F
  • Structure Factors (259 Kb)
  • Retrieve 3R8F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3R8F from S2C, [Save to disk]
  • Re-refined 3r8f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3R8F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3r8f] [3r8f_A] [3r8f_B] [3r8f_C] [3r8f_D] [3r8f_E]
  • SWISS-PROT database:
  • Domains found in 3R8F: [AAA] [Bac_DnaA_C ] by SMART

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