3RC8 Hydrolase Rna date Mar 30, 2011
title Human Mitochondrial Helicase Suv3 In Complex With Short Rna
authors Z.Dauter, R.Jedrzejczak, M.Dauter, J.Wang, R.Szczesny, P.Stepien
compound source
Molecule: Atp-Dependent Rna Helicase Supv3l1, Mitochondrial
Chain: A
Fragment: Residues 47-722
Synonym: Suppressor Of Var1 3-Like Protein 1, Suv3-Like Pro
Ec: 3.6.4.13
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Supv3l1, Suv3
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pdest-Hismbp

Molecule: Rna Fragment
Chain: E
Engineered: Yes

Synthetic: Yes
symmetry Space Group: P 32
R_factor 0.177 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
94.430 94.430 88.030 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.90 Å
ligand
enzyme Hydrolase E.C.3.6.4.13 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceHuman Suv3 protein reveals unique features among SF2 helicases., Jedrzejczak R, Wang J, Dauter M, Szczesny RJ, Stepien PP, Dauter Z, Acta Crystallogr D Biol Crystallogr. 2011 Nov;67(Pt 11):988-96. Epub 2011 Oct 19. PMID:22101826
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (214 Kb) [Save to disk]
  • Biological Unit Coordinates (3rc8.pdb1.gz) 206 Kb
  • CSU: Contacts of Structural Units for 3RC8
  • Structure Factors (289 Kb)
  • Retrieve 3RC8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3RC8 from S2C, [Save to disk]
  • Re-refined 3rc8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3RC8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3RC8
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3RC8, from MSDmotif at EBI
  • Fold representative 3rc8 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3rc8_A] [3rc8_E] [3rc8]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3RC8: [HELICc ] by SMART
  • Other resources with information on 3RC8
  • Community annotation for 3RC8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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