3S98 Signaling Protein Receptor date Jun 01, 2011
title Human Ifnar1
authors C.Thomas, K.C.Garcia
compound source
Molecule: Interferon Alphabeta Receptor 1
Chain: A
Fragment: Unp Residues 30-332
Synonym: Ifn-R-1, Ifn-Alphabeta Receptor 1, Cytokine Recep II Member 1, Cytokine Receptor Family 2 Member 1, Crf2-1, T Interferon Receptor 1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ifnar1, Ifnar
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111
symmetry Space Group: P 21 21 21
R_factor 0.210 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
47.090 86.180 91.340 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand MSE, NAG enzyme
Primary referenceStructural Linkage between Ligand Discrimination and Receptor Activation by Type I Interferons., Thomas C, Moraga I, Levin D, Krutzik PO, Podoplelova Y, Trejo A, Lee C, Yarden G, Vleck SE, Glenn JS, Nolan GP, Piehler J, Schreiber G, Garcia KC, Cell. 2011 Aug 19;146(4):621-32. PMID:21854986
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (99 Kb) [Save to disk]
  • Biological Unit Coordinates (3s98.pdb1.gz) 93 Kb
  • LPC: Ligand-Protein Contacts for 3S98
  • CSU: Contacts of Structural Units for 3S98
  • Structure Factors (323 Kb)
  • Retrieve 3S98 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3S98 from S2C, [Save to disk]
  • Re-refined 3s98 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3S98 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3S98
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3S98, from MSDmotif at EBI
  • Fold representative 3s98 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3s98] [3s98_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3S98: [FN3 ] by SMART
  • Other resources with information on 3S98
  • Community annotation for 3S98 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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