3SOO Rna Binding Protein date Jun 30, 2011
title Crystal Structure Of A Line-1 Type Transposase Domain-Contai Protein 1 (L1td1) From Homo Sapiens At 2.73 A Resolution
authors Joint Center For Structural Genomics (Jcsg), Partnership For Biology (Stemcell)
compound source
Molecule: Line-1 Type Transposase Domain-Containing Protein
Chain: A, B, C
Fragment: Residues 235-321
Synonym: Es Cell-Associated Protein 11
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bc111559, Ecat11, L1td1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Hk100
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Speedet
symmetry Space Group: P 65 2 2
R_factor 0.226 R_Free 0.259
length a length b length c angle alpha angle beta angle gamma
69.140 69.140 292.270 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.73 Å
ligand CL, MLY, MSE, SO4 enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (97 Kb) [Save to disk]
  • Biological Unit Coordinates (3soo.pdb1.gz) 61 Kb
  • Biological Unit Coordinates (3soo.pdb2.gz) 59 Kb
  • LPC: Ligand-Protein Contacts for 3SOO
  • CSU: Contacts of Structural Units for 3SOO
  • Structure Factors (2747 Kb)
  • Retrieve 3SOO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3SOO from S2C, [Save to disk]
  • Re-refined 3soo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3SOO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3SOO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3SOO, from MSDmotif at EBI
  • Fold representative 3soo from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3soo_B] [3soo] [3soo_A] [3soo_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3SOO
  • Community annotation for 3SOO at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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