3U9J Protein Binding date Oct 19, 2011
title Crystal Structure Of Oxidized Human Fbxl5 Hemerythrin Like D
authors P.Li
compound source
Molecule: F-Boxlrr-Repeat Protein 5
Chain: A, B
Synonym: F-Box And Leucine-Rich Repeat Protein 5, F-Box Pro Fbl4fbl5, P45skp2-Like Protein;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fbxl5, Fbl4, Fbl5, Flr1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 2
R_factor 0.167 R_Free 0.217
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.082 77.343 78.190 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand FE, MSE enzyme
Primary referenceThe Structural Basis of Iron Sensing by the Human F-box Protein FBXL5., Shu C, Sung MW, Stewart MD, Igumenova TI, Tan X, Li P, Chembiochem. 2012 Apr 16;13(6):788-91. doi: 10.1002/cbic.201200043. PMID:22492618
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (125 Kb) [Save to disk]
  • Biological Unit Coordinates (3u9j.pdb1.gz) 61 Kb
  • Biological Unit Coordinates (3u9j.pdb2.gz) 61 Kb
  • LPC: Ligand-Protein Contacts for 3U9J
  • CSU: Contacts of Structural Units for 3U9J
  • Structure Factors (936 Kb)
  • Retrieve 3U9J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3U9J from S2C, [Save to disk]
  • Re-refined 3u9j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3U9J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3U9J
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3U9J, from MSDmotif at EBI
  • Fold representative 3u9j from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3u9j_B] [3u9j_A] [3u9j]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3U9J
  • Community annotation for 3U9J at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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