3V3K	Hydrolase	date	Dec 13, 2011
title	Human Caspase 9 In Complex With Bacterial Effector Protein
authors	M.Moertl, K.Maskos, H.Steuber
compound		source
Molecule: Caspase-9 Chain: A, C, E, G, I, K, M, O Fragment: Unp Residues 141-416 Synonym: Casp-9, Apoptotic Protease Mch-6, Apoptotic Protea Activating Factor 3, Apaf-3, Ice-Like Apoptotic Protease 6, Caspase-9 Subunit P35, Caspase-9 Subunit P10; Ec: 3.4.22.62 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Casp9, Mch6 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Putative Uncharacterized Protein Ecs1815 Chain: B, D, F, H, J, L, N, P Fragment: Unp Residues 25-189 Engineered: Yes		Organism_scientific: Escherichia Coli O157:H7 Organism_taxid: 83334 Gene: Ecs1815, Z6020 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 21	R_factor 0.239 R_Free 0.259
crystal cell	length a length b length c angle alpha angle beta angle gamma 100.703 209.906 317.231 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.49 Å
ligand		enzyme	Hydrolase E.C.3.4.22.62 BRENDA
Gene Ontology	Chain Function Process Component A, O, M, C, K, I, G, E

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (511 Kb) [Save to disk] Biological Unit Coordinates (3v3k.pdb1.gz) 68 Kb Biological Unit Coordinates (3v3k.pdb2.gz) 67 Kb Biological Unit Coordinates (3v3k.pdb3.gz) 68 Kb Biological Unit Coordinates (3v3k.pdb4.gz) 67 Kb Biological Unit Coordinates (3v3k.pdb5.gz) 68 Kb Biological Unit Coordinates (3v3k.pdb6.gz) 66 Kb Biological Unit Coordinates (3v3k.pdb7.gz) 68 Kb Biological Unit Coordinates (3v3k.pdb8.gz) 67 Kb CSU: Contacts of Structural Units for 3V3K Structure Factors (685 Kb) Retrieve 3V3K in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3V3K from S2C, [Save to disk] Re-refined 3v3k structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3V3K in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3V3K

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3V3K, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3v3k_O] [3v3k_M] [3v3k_P] [3v3k_D] [3v3k] [3v3k_N] [3v3k_F] [3v3k_J] [3v3k_A] [3v3k_G] [3v3k_L] [3v3k_K] [3v3k_H] [3v3k_C] [3v3k_I] [3v3k_E] [3v3k_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3V3K: [CASc ] by SMART

Other resources with information on 3V3K

Community annotation for 3V3K at PDBWiki (http://pdbwiki.org)

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