3W6P Hydrolase date Feb 17, 2013
title Crystal Structure Of Human Dlp1 In Complex With Gdp.Alf4
authors H.Kishida, S.Sugio
compound source
Molecule: Dynamin-1-Like Protein
Chain: A, B
Synonym: Dnm1pvps1p-Like Protein, Dvlp, Dynamin Family Mem Proline-Rich Carboxyl-Terminal Domain Less, Dymple, Dynamin Protein, Dynamin-Like Protein 4, Dynamin-Like Protein Iv, H Dynamin-Related Protein 1;
Engineered: Yes
Other_details: Chimera Protein Of Unp Residues 1-329 And 70 Uniprot O00429, Linked With Linker Residues Hgtds.
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dnm1l, Dlp1, Drp1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet32a
symmetry Space Group: P 21 21 21
R_factor 0.182 R_Free 0.214
length a length b length c angle alpha angle beta angle gamma
51.410 109.130 128.730 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand ALF, CA, GDP, MG, NA, PG4 enzyme Hydrolase E.C. BRENDA
A, B

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (129 Kb) [Save to disk]
  • Biological Unit Coordinates (3w6p.pdb1.gz) 123 Kb
  • LPC: Ligand-Protein Contacts for 3W6P
  • CSU: Contacts of Structural Units for 3W6P
  • Structure Factors (607 Kb)
  • Retrieve 3W6P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3W6P from S2C, [Save to disk]
  • Re-refined 3w6p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3W6P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3W6P
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3W6P, from MSDmotif at EBI
  • Fold representative 3w6p from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3w6p_B] [3w6p] [3w6p_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3W6P: [DYNc ] by SMART
  • Other resources with information on 3W6P
  • Community annotation for 3W6P at PDBWiki (http://pdbwiki.org)

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