3WSY Protein Binding date Mar 30, 2014
title Sorla Vps10p Domain In Complex With Its Own Propeptide Fragm
authors Y.Kitago, Z.Nakata, M.Nagae, T.Nogi, J.Takagi
compound source
Molecule: Sortilin-Related Receptor
Chain: A
Fragment: N-Terminal Domain, Unp Residues 86-753
Synonym: Neuronal Extracellular Receptor
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sorl1
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029
Expression_system_variant: Lec 3.2.8.1
Expression_system_cell_line: Cho Cells
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pef

Molecule: Peptide From Sortilin-Related Receptor
Chain: C
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: This Sequence Exists At The Upstream Of Sort Related Receptor
symmetry Space Group: I 41
R_factor 0.195 R_Free 0.232
crystal
cell
length a length b length c angle alpha angle beta angle gamma
158.186 158.186 145.458 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.11 Å
ligand NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (115 Kb) [Save to disk]
  • Biological Unit Coordinates (3wsy.pdb1.gz) 109 Kb
  • LPC: Ligand-Protein Contacts for 3WSY
  • CSU: Contacts of Structural Units for 3WSY
  • Structure Factors (591 Kb)
  • Retrieve 3WSY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3WSY from S2C, [Save to disk]
  • Re-refined 3wsy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3WSY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3WSY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3WSY, from MSDmotif at EBI
  • Fold representative 3wsy from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3wsy_A] [3wsy] [3wsy_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3WSY: [VPS10 ] by SMART
  • Other resources with information on 3WSY
  • Community annotation for 3WSY at PDBWiki (http://pdbwiki.org)

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