OCA Atlas for 3WWK

3WWK

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

Gene
Ontology

Chain	Function	Process	Component
J, D, A, G	toxin activity

Primary reference

A Platform of C-type Lectin-like Receptor CLEC-2 for Binding O-Glycosylated Podoplanin and Nonglycosylated Rhodocytin., Nagae M, Morita-Matsumoto K, Kato M, Kaneko MK, Kato Y, Yamaguchi Y, Structure. 2014 Dec 2;22(12):1711-21. doi: 10.1016/j.str.2014.09.009. Epub 2014, Nov 6. PMID:25458834

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (251 Kb) [Save to disk]

Biological Unit Coordinates (3wwk.pdb1.gz) 64 Kb

Biological Unit Coordinates (3wwk.pdb2.gz) 64 Kb

Biological Unit Coordinates (3wwk.pdb3.gz) 64 Kb

Biological Unit Coordinates (3wwk.pdb4.gz) 63 Kb

CSU: Contacts of Structural Units for 3WWK

Structure Factors (2324 Kb)

Retrieve 3WWK in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3WWK from S2C, [Save to disk]

Re-refined 3wwk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3WWK in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3wwk] [3wwk_A] [3wwk_B] [3wwk_C] [3wwk_D] [3wwk_E] [3wwk_F] [3wwk_G] [3wwk_H] [3wwk_I] [3wwk_J] [3wwk_K] [3wwk_L]

SWISS-PROT database:

Domain found in 3WWK: [CLECT ] by SMART

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