3ZH8 Transferase date Dec 20, 2012
title A Novel Small Molecule Apkc Inhibitor
authors S.Kjaer, A.G.Purkiss, B.Kostelecky, P.P.Knowles, E.Soriano, J.Mur N.Q.Mcdonald
compound source
Molecule: Protein Kinase C Iota Type
Chain: A, B, C
Fragment: Kinase Domain, Residues 248-596
Synonym: Pkc Iota, Atypical Protein Kinase C-Lambdaiota, P Lambdaiota, Apkc-Lambdaiota, Npkc-Iota;
Ec: 2.7.11.13
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: High Five
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pbacpak-His3
symmetry Space Group: P 31
R_factor 0.210 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
113.580 113.580 82.410 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.74 Å
ligand C58, CL, EDO, IOD, TPO enzyme Transferase E.C.2.7.11.13 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceAdenosine-binding motif mimicry and cellular effects of a thieno[2,3-d]pyrimidine-based chemical inhibitor of atypical protein kinase C isozymes., Kjaer S, Linch M, Purkiss A, Kostelecky B, Knowles PP, Rosse C, Riou P, Soudy C, Kaye S, Patel B, Soriano E, Murray-Rust J, Barton C, Dillon C, Roffey J, Parker PJ, McDonald NQ, Biochem J. 2013 Feb 18. PMID:23418854
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (330 Kb) [Save to disk]
  • Biological Unit Coordinates (3zh8.pdb1.gz) 109 Kb
  • Biological Unit Coordinates (3zh8.pdb2.gz) 111 Kb
  • Biological Unit Coordinates (3zh8.pdb3.gz) 108 Kb
  • LPC: Ligand-Protein Contacts for 3ZH8
  • CSU: Contacts of Structural Units for 3ZH8
  • Structure Factors (1105 Kb)
  • Retrieve 3ZH8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ZH8 from S2C, [Save to disk]
  • Re-refined 3zh8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ZH8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ZH8
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3ZH8, from MSDmotif at EBI
  • Fold representative 3zh8 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3zh8_C] [3zh8_A] [3zh8] [3zh8_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3ZH8: [S_TK_X] [S_TKc ] by SMART
  • Other resources with information on 3ZH8
  • Community annotation for 3ZH8 at PDBWiki (http://pdbwiki.org)

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