4B6L Transferase date Aug 14, 2012
title Discovery Of Oral Polo-Like Kinase (Plk) Inhibitors With Enh Selectivity Profile Using Residue Targeted Drug Design
authors K.Brown, J.D.Charrier, S.Durrant, M.Griffiths, C.Hudson, D.Kay, R. M.Odonnell, F.Pierard, H.Twin, P.Weber, S.Young
compound source
Molecule: Serinethreonine-Protein Kinase Plk3
Chain: A
Fragment: Catalytic Kinase Domain, Residues 52-332
Synonym: Polo-Like Kinase 3, Cytokine-Inducible Serinethreonine-Protein Kinase, Fgf-Inducible Kinase, Pol Kinase 3, Plk-3, Proliferation-Related Kinase;
Ec: 2.7.11.21
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
Expression_system_vector: Pbev10topo
symmetry Space Group: C 1 2 1
R_factor 0.2443 R_Free 0.2889
crystal
cell
length a length b length c angle alpha angle beta angle gamma
144.140 56.370 45.320 90.00 96.83 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand 9ZP, SO4 enzyme Transferase E.C.2.7.11.21 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (103 Kb) [Save to disk]
  • Biological Unit Coordinates (4b6l.pdb1.gz) 99 Kb
  • LPC: Ligand-Protein Contacts for 4B6L
  • CSU: Contacts of Structural Units for 4B6L
  • Structure Factors (712 Kb)
  • Retrieve 4B6L in mmCIF format [Save to disk]
  • Re-refined 4b6l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4B6L in 3D
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4B6L
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4B6L, from MSDmotif at EBI
  • Fold representative 4b6l from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4b6l_A] [4b6l]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4B6L: [S_TKc ] by SMART
  • Other resources with information on 4B6L
  • Community annotation for 4B6L at PDBWiki (http://pdbwiki.org)

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