4BMJ Apoptosis date May 09, 2013
title Structure Of The Ubz1and2 Tandem Of The Ubiquitin-Binding Ad Protein Tax1bp1
authors M.A.Ceregido, M.Spinola-Amilibia, L.Buts, J.Rivera, J.Bravo, N.A. Nuland
compound source
Molecule: Tax1-Binding Protein 1
Chain: A, B, C, D, E, F, G, H, I, J, K
Fragment: Residues 725-789
Synonym: Traf6-Binding Protein, Tax1bp1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Rosetta Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28-6xhis-Pptax1bp1_725-789
symmetry Space Group: P 65 2 2
R_factor 0.215 R_Free 0.255
crystal
cell
length a length b length c angle alpha angle beta angle gamma
118.878 118.878 327.345 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.75 Å
ligand CL, ZN enzyme
Primary referenceThe Structure of TAX1BP1 UBZ1+2 Provides Insight into Target Specificity and Adaptability., Ceregido MA, Spinola Amilibia M, Buts L, Rivera-Torres J, Garcia-Pino A, Bravo J, van Nuland NA, J Mol Biol. 2013 Nov 13. pii: S0022-2836(13)00717-1. doi:, 10.1016/j.jmb.2013.11.006. PMID:24239949
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (256 Kb) [Save to disk]
  • Biological Unit Coordinates (4bmj.pdb1.gz) 26 Kb
  • Biological Unit Coordinates (4bmj.pdb2.gz) 26 Kb
  • Biological Unit Coordinates (4bmj.pdb3.gz) 26 Kb
  • Biological Unit Coordinates (4bmj.pdb4.gz) 24 Kb
  • Biological Unit Coordinates (4bmj.pdb5.gz) 24 Kb
  • Biological Unit Coordinates (4bmj.pdb6.gz) 24 Kb
  • Biological Unit Coordinates (4bmj.pdb7.gz) 24 Kb
  • Biological Unit Coordinates (4bmj.pdb8.gz) 26 Kb
  • Biological Unit Coordinates (4bmj.pdb9.gz) 26 Kb
  • LPC: Ligand-Protein Contacts for 4BMJ
  • CSU: Contacts of Structural Units for 4BMJ
  • Structure Factors (1734 Kb)
  • Retrieve 4BMJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4BMJ from S2C, [Save to disk]
  • Re-refined 4bmj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4BMJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4BMJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4BMJ, from MSDmotif at EBI
  • Fold representative 4bmj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4bmj_B] [4bmj_J] [4bmj] [4bmj_C] [4bmj_F] [4bmj_K] [4bmj_A] [4bmj_D] [4bmj_G] [4bmj_E] [4bmj_I] [4bmj_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4BMJ: [ZnF_C2H2 ] by SMART
  • Other resources with information on 4BMJ
  • Community annotation for 4BMJ at PDBWiki (http://pdbwiki.org)

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