4DRB Dna Binding Protein Protein Binding date Feb 17, 2012
title The Crystal Structure Of Fancm Bound Mhf Complex
authors Y.Tao, L.Niu, M.Teng
compound source
Molecule: Centromere Protein S
Chain: A, B, D, E, G, H
Fragment: C-Terminus Deleted, Unp Residues 1-114
Synonym: Cenp-S, Apoptosis-Inducing Taf9-Like Domain-Contai Protein 1, Fancm-Interacting Histone Fold Protein 1, Fancon Associated Polypeptide Of 16 Kda;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Apitd1, Cenps, Faap16, Mhf1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Fanconi Anemia Group M Protein
Chain: C, F, I
Fragment: Mhf Binding Domain, Unp Residues 661-800
Synonym: Protein Facm, Atp-Dependent Rna Helicase Fancm, Fa Anemia-Associated Polypeptide Of 250 Kda, Faap250, Protein Ortholog;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fancm, Kiaa1596
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Centromere Protein X
Chain: J, K, L, M, N, O
Synonym: Cenp-X, Fancm-Interacting Histone Fold Protein 2, Anemia-Associated Polypeptide Of 10 Kda, Retinoic Acid-Indu D9 Protein Homolog, Stimulated By Retinoic Acid Gene 13 Pro Homolog;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Stra13, Cenpx, Faap10, Mhf2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.221 R_Free 0.256
crystal
cell
length a length b length c angle alpha angle beta angle gamma
111.317 70.025 115.751 90.00 91.41 90.00
method X-Ray Diffractionresolution 2.63 Å
ligand MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, E, B, H, D, G


O, J, N, K, M, L


Primary referenceThe structure of the FANCM-MHF complex reveals physical features for functional assembly., Tao Y, Jin C, Li X, Qi S, Chu L, Niu L, Yao X, Teng M, Nat Commun. 2012 Apr 17;3:782. doi: 10.1038/ncomms1779. PMID:22510687
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (222 Kb) [Save to disk]
  • Biological Unit Coordinates (4drb.pdb1.gz) 75 Kb
  • Biological Unit Coordinates (4drb.pdb2.gz) 71 Kb
  • Biological Unit Coordinates (4drb.pdb3.gz) 75 Kb
  • LPC: Ligand-Protein Contacts for 4DRB
  • CSU: Contacts of Structural Units for 4DRB
  • Structure Factors (1742 Kb)
  • Retrieve 4DRB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DRB from S2C, [Save to disk]
  • Re-refined 4drb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4DRB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4DRB
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4DRB, from MSDmotif at EBI
  • Fold representative 4drb from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4drb] [4drb_O] [4drb_E] [4drb_D] [4drb_N] [4drb_B] [4drb_F] [4drb_H] [4drb_L] [4drb_K] [4drb_G] [4drb_M] [4drb_I] [4drb_A] [4drb_J] [4drb_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4DRB
  • Community annotation for 4DRB at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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