4ERV Metal Transport date Apr 20, 2012
title Crystal Structure Of Human Ryanodine Receptor 3 (2597-2800)
authors Z.Yuchi, K.Lau, F.Van Petegem
compound source
Molecule: Ryanodine Receptor 3
Chain: A
Synonym: Ryr-3, Ryr3, Brain Ryanodine Receptor-Calcium Rele Channel, Brain-Type Ryanodine Receptor, Type 3 Ryanodine Re
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ryr3, Hbrr
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta(De3)Placi
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28hmt
symmetry Space Group: C 1 2 1
R_factor 0.190 R_Free 0.220
crystal
cell
length a length b length c angle alpha angle beta angle gamma
93.570 58.540 47.460 90.00 97.21 90.00
method X-Ray Diffractionresolution 1.75 Å
ligand GOL, SO4 enzyme
Primary referenceDisease mutations in the ryanodine receptor central region: crystal structures of a phosphorylation hot spot domain., Yuchi Z, Lau K, Van Petegem F, Structure. 2012 Jul 3;20(7):1201-11. Epub 2012 Jun 14. PMID:22705209
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (4erv.pdb1.gz) 53 Kb
  • Biological Unit Coordinates (4erv.pdb2.gz) 106 Kb
  • LPC: Ligand-Protein Contacts for 4ERV
  • CSU: Contacts of Structural Units for 4ERV
  • Structure Factors (432 Kb)
  • Retrieve 4ERV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4ERV from S2C, [Save to disk]
  • Re-refined 4erv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4ERV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4ERV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4ERV, from MSDmotif at EBI
  • Fold representative 4erv from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4erv] [4erv_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4ERV
  • Community annotation for 4ERV at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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