4F0E Transferase Transferase Inhibitor date May 04, 2012
title Human Adp-Ribosyltransferase 7 (Artd7parp15), Catalytic Dom Complex With Sto1102
authors T.Karlberg, C.D.Andersson, A.Lindgren, A.G.Thorsell, T.Ekblad, S. J.Weigelt, M.Elofsson, A.Linusson, H.Schuler
compound source
Molecule: Poly [Adp-Ribose] Polymerase 15
Chain: A, B, C, D
Synonym: Parp-15, B-Aggressive Lymphoma Protein 3
Ec: 2.4.2.30
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bal3, Parp15
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)R3 Prare
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 1 21 1
R_factor 0.220 R_Free 0.287
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.676 45.383 123.389 90.00 90.25 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand 0RU enzyme Transferase E.C.2.4.2.30 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceDiscovery of Ligands for ADP-Ribosyltransferases via Docking-Based Virtual Screening., Andersson CD, Karlberg T, Ekblad T, Lindgren AE, Thorsell AG, Spjut S, Uciechowska U, Niemiec MS, Wittung-Stafshede P, Weigelt J, Elofsson M, Schuler H, Linusson A, J Med Chem. 2012 Aug 20. PMID:22823910
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (136 Kb) [Save to disk]
  • Biological Unit Coordinates (4f0e.pdb1.gz) 35 Kb
  • Biological Unit Coordinates (4f0e.pdb2.gz) 35 Kb
  • Biological Unit Coordinates (4f0e.pdb3.gz) 34 Kb
  • Biological Unit Coordinates (4f0e.pdb4.gz) 34 Kb
  • Biological Unit Coordinates (4f0e.pdb5.gz) 67 Kb
  • Biological Unit Coordinates (4f0e.pdb6.gz) 67 Kb
  • LPC: Ligand-Protein Contacts for 4F0E
  • CSU: Contacts of Structural Units for 4F0E
  • Structure Factors (227 Kb)
  • Retrieve 4F0E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4F0E from S2C, [Save to disk]
  • Re-refined 4f0e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4F0E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4F0E
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4F0E, from MSDmotif at EBI
  • Fold representative 4f0e from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4f0e_D] [4f0e_B] [4f0e] [4f0e_C] [4f0e_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4F0E
  • Community annotation for 4F0E at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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