4F9O Transferase date May 19, 2012
title Crystal Structure Of Recombinant Human Hexokinase Type I Wit Glucose 6-Phosphate
authors L.Shen, R.B.Honzatko
compound source
Molecule: Hexokinase-1
Chain: A, B
Synonym: Brain Form Hexokinase, Hexokinase Type I, Hk I
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hk1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet24
symmetry Space Group: P 1 21 1
R_factor 0.240 R_Free 0.258
length a length b length c angle alpha angle beta angle gamma
82.980 122.090 120.350 90.00 92.97 90.00
method X-Ray Diffractionresolution 2.65 Å
ligand 0NZ, BGC, CIT, NA enzyme Transferase E.C. BRENDA
A, B

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (292 Kb) [Save to disk]
  • Biological Unit Coordinates (4f9o.pdb1.gz) 145 Kb
  • Biological Unit Coordinates (4f9o.pdb2.gz) 145 Kb
  • LPC: Ligand-Protein Contacts for 4F9O
  • CSU: Contacts of Structural Units for 4F9O
  • Structure Factors (1044 Kb)
  • Retrieve 4F9O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4F9O from S2C, [Save to disk]
  • Re-refined 4f9o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4F9O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4F9O
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4F9O, from MSDmotif at EBI
  • Fold representative 4f9o from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4f9o_B] [4f9o_A] [4f9o]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4F9O
  • Community annotation for 4F9O at PDBWiki (http://pdbwiki.org)

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