4FP9 Transferase date Jun 21, 2012
title Human Mterf4-Nsun4 Protein Complex
authors H.Spahr, B.M.Hallberg
compound source
Molecule: Methyltransferase Nsun4
Chain: A, C, D, F
Synonym: Nol1nop2sun Domain Family Member 4
Ec: 2.1.1.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nsun4
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pcdf

Molecule: Mterf Domain-Containing Protein 2
Chain: B, E, G, H
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hspc096, Mterfd2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pcdf
symmetry Space Group: P 21 21 21
R_factor 0.229 R_Free 0.246
crystal
cell
length a length b length c angle alpha angle beta angle gamma
78.760 82.270 507.570 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand SAM, SO4 enzyme Transferase E.C.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
E, B, H, G


F, A, C, D


Primary referenceStructure of the human MTERF4-NSUN4 protein complex that regulates mitochondrial ribosome biogenesis., Spahr H, Habermann B, Gustafsson CM, Larsson NG, Hallberg BM, Proc Natl Acad Sci U S A. 2012 Sep 18;109(38):15253-8. Epub 2012 Sep 4. PMID:22949673
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (808 Kb) [Save to disk]
  • Biological Unit Coordinates (4fp9.pdb1.gz) 789 Kb
  • Biological Unit Coordinates (4fp9.pdb2.gz) 201 Kb
  • Biological Unit Coordinates (4fp9.pdb3.gz) 202 Kb
  • Biological Unit Coordinates (4fp9.pdb4.gz) 200 Kb
  • Biological Unit Coordinates (4fp9.pdb5.gz) 203 Kb
  • LPC: Ligand-Protein Contacts for 4FP9
  • CSU: Contacts of Structural Units for 4FP9
  • Structure Factors (1432 Kb)
  • Retrieve 4FP9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4FP9 from S2C, [Save to disk]
  • Re-refined 4fp9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4FP9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4FP9
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4FP9, from MSDmotif at EBI
  • Fold representative 4fp9 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4fp9_G] [4fp9_F] [4fp9] [4fp9_H] [4fp9_E] [4fp9_B] [4fp9_A] [4fp9_C] [4fp9_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4FP9: [Mterf ] by SMART
  • Other resources with information on 4FP9
  • Community annotation for 4FP9 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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