4JG6 Transferase Transferase Inhibitor date Feb 28, 2013
title Rsk2 Ctd Bound To 2-Cyano-3-(1h-Indazol-5-Yl)Acrylamide
authors R.M.Miller, V.O.Paavilainen, S.Krishnan, I.M.Serafimova, J.Taunt
compound source
Molecule: Ribosomal Protein S6 Kinase Alpha-3
Chain: A
Synonym: S6k-Alpha-3, 90 Kda Ribosomal Protein S6 Kinase 3, 3, P90rsk3, Insulin-Stimulated Protein Kinase 1, Ispk-1, Ma Activated Protein Kinase 1b, Mapk-Activated Protein Kinase Kinase 1b, Mapkapk-1b, Ribosomal S6 Kinase 2, Rsk-2, Pp90rs
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rps6ka3, Ispk1, Mapkapk1b, Rsk2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 41 21 2
R_factor 0.252 R_Free 0.299
length a length b length c angle alpha angle beta angle gamma
47.280 47.280 291.970 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand 1LB, NA enzyme Transferase E.C. BRENDA

Primary referenceElectrophilic fragment-based design of reversible covalent kinase inhibitors., Miller RM, Paavilainen VO, Krishnan S, Serafimova IM, Taunton J, J Am Chem Soc. 2013 Apr 10;135(14):5298-301. doi: 10.1021/ja401221b. Epub 2013, Mar 29. PMID:23540679
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (154 Kb) [Save to disk]
  • Biological Unit Coordinates (4jg6.pdb1.gz) 149 Kb
  • LPC: Ligand-Protein Contacts for 4JG6
  • CSU: Contacts of Structural Units for 4JG6
  • Structure Factors (353 Kb)
  • Retrieve 4JG6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4JG6 from S2C, [Save to disk]
  • Re-refined 4jg6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4JG6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4JG6
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4JG6, from MSDmotif at EBI
  • Fold representative 4jg6 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4jg6] [4jg6_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4JG6: [S_TKc ] by SMART
  • Other resources with information on 4JG6
  • Community annotation for 4JG6 at PDBWiki (http://pdbwiki.org)

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