4JGT Transferase date Mar 03, 2013
title Structure And Kinetic Analysis Of H2s Production By Human Mercaptopyruvate Sulfurtransferase
authors M.Koutmos, K.Yamada, P.K.Yadav, T.Chiku, R.Banerjee
compound source
Molecule: 3-Mercaptopyruvate Sulfurtransferase
Chain: A, B, C
Synonym: Mst
Ec: 2.8.1.2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mpst, Tst2
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pet28b
symmetry Space Group: C 1 2 1
R_factor 0.185 R_Free 0.220
crystal
cell
length a length b length c angle alpha angle beta angle gamma
110.737 171.859 72.984 90.00 117.18 90.00
method X-Ray Diffractionresolution 2.16 Å
ligand CSS, GOL, PYR, SO4 enzyme Transferase E.C.2.8.1.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceStructure and kinetic analysis of H2S production by human mercaptopyruvate sulfurtransferase., Yadav PK, Yamada K, Chiku T, Koutmos M, Banerjee R, J Biol Chem. 2013 May 22. PMID:23698001
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (148 Kb) [Save to disk]
  • Biological Unit Coordinates (4jgt.pdb1.gz) 50 Kb
  • Biological Unit Coordinates (4jgt.pdb2.gz) 49 Kb
  • Biological Unit Coordinates (4jgt.pdb3.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 4JGT
  • CSU: Contacts of Structural Units for 4JGT
  • Structure Factors (831 Kb)
  • Retrieve 4JGT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4JGT from S2C, [Save to disk]
  • Re-refined 4jgt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4JGT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4JGT
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4JGT, from MSDmotif at EBI
  • Fold representative 4jgt from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4jgt] [4jgt_B] [4jgt_A] [4jgt_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4JGT: [RHOD ] by SMART
  • Other resources with information on 4JGT
  • Community annotation for 4JGT at PDBWiki (http://pdbwiki.org)

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