OCA Atlas for 4KYI

4KYI

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

EDO, GNP, GOL, MG

enzyme

Gene
Ontology

Chain	Function	Process	Component
A, E, C, G
D, F, B, H

Primary reference

Structural basis for the recruitment and activation of the Legionella phospholipase VipD by the host GTPase Rab5., Lucas M, Gaspar AH, Pallara C, Rojas AL, Fernandez-Recio J, Machner MP, Hierro A, Proc Natl Acad Sci U S A. 2014 Aug 26;111(34):E3514-23. doi:, 10.1073/pnas.1405391111. Epub 2014 Aug 11. PMID:25114243

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (396 Kb) [Save to disk]

Biological Unit Coordinates (4kyi.pdb1.gz) 102 Kb

Biological Unit Coordinates (4kyi.pdb2.gz) 102 Kb

Biological Unit Coordinates (4kyi.pdb3.gz) 103 Kb

Biological Unit Coordinates (4kyi.pdb4.gz) 102 Kb

LPC: Ligand-Protein Contacts for 4KYI

CSU: Contacts of Structural Units for 4KYI

Structure Factors (371 Kb)

Retrieve 4KYI in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4KYI from S2C, [Save to disk]

Re-refined 4kyi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4KYI in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4kyi] [4kyi_A] [4kyi_B] [4kyi_C] [4kyi_D] [4kyi_E] [4kyi_F] [4kyi_G] [4kyi_H]

SWISS-PROT database:

Domain found in 4KYI: [RAB ] by SMART

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]