OCA Atlas for 4MSL

4MSL

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

2ET, BMA, MAN, NAG, PG4

enzyme

Gene
Ontology

Chain	Function	Process	Component
A

Primary reference

Identification of the first small-molecule ligand of the neuronal receptor sortilin and structure determination of the receptor-ligand complex., Andersen JL, Schroder TJ, Christensen S, Strandbygard D, Pallesen LT, Garcia-Alai MM, Lindberg S, Langgard M, Eskildsen JC, David L, Tagmose L, Simonsen KB, Maltas PJ, Ronn LC, de Jong IE, Malik IJ, Egebjerg J, Karlsson JJ, Uppalanchi S, Sakumudi DR, Eradi P, Watson SP, Thirup S, Acta Crystallogr D Biol Crystallogr. 2014 Feb;70(Pt 2):451-60. doi:, 10.1107/S1399004713030149. Epub 2014 Jan 29. PMID:24531479

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (228 Kb) [Save to disk]

Biological Unit Coordinates (4msl.pdb1.gz) 222 Kb

LPC: Ligand-Protein Contacts for 4MSL

CSU: Contacts of Structural Units for 4MSL

Structure Factors (550 Kb)

Retrieve 4MSL in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4MSL from S2C, [Save to disk]

Re-refined 4msl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4MSL in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4msl] [4msl_A]

SWISS-PROT database:

Domain found in 4MSL: [VPS10 ] by SMART

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