4OBO Transferase Transferase Inhibitor date Jan 07, 2014
title Map4k4 In Complex With Inhibitor (Compound 22), 6-(3-Chlorop Quinazolin-4-Amine
authors S.F.Harris, P.Wu, M.Coons
compound source
Molecule: Mitogen-Activated Protein Kinase Kinase Kinase Ki
Chain: A, B
Fragment: Kinase Domain
Synonym: Hpkgck-Like Kinase Hgk, Mapkerk Kinase Kinase Ki Mek Kinase Kinase 4, Mekkk 4, Nck-Interacting Kinase;
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hgk, Kiaa0687, Map4k4, Nik
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
symmetry Space Group: P 21 21 21
R_factor 0.209 R_Free 0.235
crystal
cell
length a length b length c angle alpha angle beta angle gamma
80.000 81.651 93.296 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand 2QV, MES, NA enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDiscovery of Selective 4-Amino-pyridopyrimidine Inhibitors of MAP4K4 Using Fragment-Based Lead Identification and Optimization., Crawford TD, Ndubaku CO, Chen H, Boggs JW, Bravo BJ, Delatorre K, Giannetti AM, Gould SE, Harris SF, Magnuson SR, McNamara E, Murray LJ, Nonomiya J, Sambrone A, Schmidt S, Smyczek T, Stanley M, Vitorino P, Wang L, West K, Wu P, Ye W, J Med Chem. 2014 Apr 9. PMID:24673130
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (105 Kb) [Save to disk]
  • Biological Unit Coordinates (4obo.pdb1.gz) 50 Kb
  • Biological Unit Coordinates (4obo.pdb2.gz) 53 Kb
  • Biological Unit Coordinates (4obo.pdb3.gz) 100 Kb
  • LPC: Ligand-Protein Contacts for 4OBO
  • CSU: Contacts of Structural Units for 4OBO
  • Structure Factors (657 Kb)
  • Retrieve 4OBO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4OBO from S2C, [Save to disk]
  • Re-refined 4obo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4OBO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4OBO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4OBO, from MSDmotif at EBI
  • Fold representative 4obo from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4obo_B] [4obo_A] [4obo]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4OBO: [S_TKc ] by SMART
  • Other resources with information on 4OBO
  • Community annotation for 4OBO at PDBWiki (http://pdbwiki.org)

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