4OGY Crystal structure of Fab DX-2930 in complex with human plasma kallikrein at 2.1 Angstrom resolution date
authors Edwards, T.E., Clifton, M.C., Abendroth, J., Nixon, A., Ladner, R.
compound source
symmetry
R_factor
R_Free 0.2210
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.10
ligand EDO enzyme
Gene KLKB1 (H. sapiens)
Gene
Ontology
ChainFunctionProcessComponent
A, B


N, L


Disease Fletcher factor deficiency OMIM:229000
Primary referenceInhibition of Plasma Kallikrein by a Highly Specific, Active Site Blocking Antibody., Kenniston JA, Faucette RR, Martik D, Comeau SR, Lindberg AP, Kopacz KJ, Conley GP, Chen J, Viswanathan M, Kastrapeli N, Cosic J, Mason S, DiLeo M, Abendroth J, Kuzmic P, Ladner RC, Edwards TE, TenHoor C, Adelman BA, Nixon AE, Sexton DJ, J Biol Chem. 2014 Jun 26. pii: jbc.M114.569061. PMID:24970892
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (426 Kb) [Save to disk]
  • Biological Unit Coordinates (4ogy.pdb1.gz) 217 Kb
  • Biological Unit Coordinates (4ogy.pdb2.gz) 207 Kb
  • LPC: Ligand-Protein Contacts for 4OGY
  • CSU: Contacts of Structural Units for 4OGY
  • Structure Factors (1818 Kb)
  • Retrieve 4OGY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4OGY from S2C, [Save to disk]
  • Re-refined 4ogy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4OGY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4OGY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4OGY, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ogy] [4ogy_L] [4ogy_A] [4ogy_M] [4ogy_B] [4ogy_N] [4ogy_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4OGY: [IG_like] [IGv] [Tryp_SPc ] by SMART
    • Other resources with information on 4OGY
  • Community annotation for 4OGY at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science