4OYJ Structure of the apo HOIP PUB domain date
authors Elliott, P.R., Komander, D.
compound source
symmetry
R_factor
R_Free 0.2545
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.00
ligand SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, K, E, B, H, M, C, D, I, G, L


Primary referenceMolecular Basis and Regulation of OTULIN-LUBAC Interaction., Elliott PR, Nielsen SV, Marco-Casanova P, Fiil BK, Keusekotten K, Mailand N, Freund SM, Gyrd-Hansen M, Komander D, Mol Cell. 2014 May 8;54(3):335-48. doi: 10.1016/j.molcel.2014.03.018. Epub 2014, Apr 10. PMID:24726323
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (377 Kb) [Save to disk]
  • Biological Unit Coordinates (4oyj.pdb1.gz) 33 Kb
  • Biological Unit Coordinates (4oyj.pdb2.gz) 34 Kb
  • Biological Unit Coordinates (4oyj.pdb3.gz) 33 Kb
  • Biological Unit Coordinates (4oyj.pdb4.gz) 34 Kb
  • Biological Unit Coordinates (4oyj.pdb5.gz) 34 Kb
  • Biological Unit Coordinates (4oyj.pdb6.gz) 33 Kb
  • Biological Unit Coordinates (4oyj.pdb7.gz) 34 Kb
  • Biological Unit Coordinates (4oyj.pdb8.gz) 32 Kb
  • Biological Unit Coordinates (4oyj.pdb9.gz) 33 Kb
  • LPC: Ligand-Protein Contacts for 4OYJ
  • CSU: Contacts of Structural Units for 4OYJ
  • Structure Factors (2927 Kb)
  • Retrieve 4OYJ in mmCIF format [Save to disk]
  • Re-refined 4oyj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4OYJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4OYJ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4OYJ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4oyj_L] [4oyj_F] [4oyj_C] [4oyj_B] [4oyj_G] [4oyj_A] [4oyj] [4oyj_H] [4oyj_M] [4oyj_E] [4oyj_K] [4oyj_D] [4oyj_I] [4oyj_J]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4OYJ
  • Community annotation for 4OYJ at PDBWiki (http://pdbwiki.org)

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