4PDK		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	3VV	enzyme
Gene	VC
Gene Ontology	Chain Function Process Component B, A
Primary reference	The 40-residue insertion in Vibrio cholerae FadR facilitates binding of an additional fatty acyl-CoA ligand., Shi W, Kovacikova G, Lin W, Taylor RK, Skorupski K, Kull FJ, Nat Commun. 2015 Jan 21;6:6032. doi: 10.1038/ncomms7032. PMID:25607896

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (186 Kb) [Save to disk] Biological Unit Coordinates (4pdk.pdb1.gz) 178 Kb LPC: Ligand-Protein Contacts for 4PDK CSU: Contacts of Structural Units for 4PDK Structure Factors (287 Kb) Retrieve 4PDK in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4PDK from S2C, [Save to disk] Re-refined 4pdk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4PDK in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4pdk] [4pdk_A] [4pdk_B] SWISS-PROT database: Domain found in 4PDK: [HTH_GNTR ] by SMART

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