4RYD Hydrolase Hydrolase Inhibitor date Dec 15, 2014
title X-Ray Structure Of Human Furin In Complex With The Competiti Inhibitor Para-Guanidinomethyl-Phac-R-Tle-R-Amba
authors S.O.Dahms, M.E.Than
compound source
Molecule: Furin
Chain: A, B, C, D, E, F
Fragment: Unp Residues 108-574
Synonym: Dibasic-Processing Enzyme, Paired Basic Amino Acid Cleaving Enzyme, Pace;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fur, Furin, Pace, Pcsk3
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293s
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phlsec

Molecule: Para-Guanidinomethyl-Phenylacetyl-Arg-(3-Methylva (Amidomethyl)Benzamidine;
Chain: H, I, J, K, L, N
Engineered: Yes

Synthetic: Yes
symmetry Space Group: P 21 21 21
R_factor 0.186 R_Free 0.219
length a length b length c angle alpha angle beta angle gamma
141.652 152.701 168.398 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.15 Å
ligand 00S, 2UE, CA, FMT, NA, TBG enzyme Hydrolase E.C. BRENDA
F, A, D, C, E, B

Primary referenceNovel Furin Inhibitors with Potent Anti-infectious Activity., Hardes K, Becker GL, Lu Y, Dahms SO, Kohler S, Beyer W, Sandvig K, Yamamoto H, Lindberg I, Walz L, von Messling V, Than ME, Garten W, Steinmetzer T, ChemMedChem. 2015 May 14. doi: 10.1002/cmdc.201500103. PMID:25974265
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (492 Kb) [Save to disk]
  • Biological Unit Coordinates (4ryd.pdb1.gz) 88 Kb
  • Biological Unit Coordinates (4ryd.pdb2.gz) 88 Kb
  • Biological Unit Coordinates (4ryd.pdb3.gz) 88 Kb
  • Biological Unit Coordinates (4ryd.pdb4.gz) 88 Kb
  • Biological Unit Coordinates (4ryd.pdb5.gz) 88 Kb
  • Biological Unit Coordinates (4ryd.pdb6.gz) 87 Kb
  • LPC: Ligand-Protein Contacts for 4RYD
  • CSU: Contacts of Structural Units for 4RYD
  • Structure Factors (1125 Kb)
  • Retrieve 4RYD in mmCIF format [Save to disk]
  • Re-refined 4ryd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4RYD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4RYD
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4RYD, from MSDmotif at EBI
  • Fold representative 4ryd from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ryd_F] [4ryd_B] [4ryd_C] [4ryd_I] [4ryd_H] [4ryd_D] [4ryd_J] [4ryd_E] [4ryd_K] [4ryd_A] [4ryd_L] [4ryd_N] [4ryd]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4RYD
  • Community annotation for 4RYD at PDBWiki (http://pdbwiki.org)

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