4U9W Transferase date Aug 06, 2014
title Crystal Structure Of Natd Bound To H4h2a Peptide And Coa
authors R.S.Magin, G.P.Liszczak, R.Marmorstein
compound source
Molecule: N-Alpha-Acetyltransferase 40
Chain: A, B, C, D
Fragment: Unp Residues 17-220
Synonym: N-Acetyltransferase 11,Natd Catalytic Subunit
Ec: 2.3.1.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Naa40, Nat11
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid

Molecule: Histone H4h2a N-Terminus
Chain: E, F, G, H
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1 21 1
R_factor 0.176 R_Free 0.223
length a length b length c angle alpha angle beta angle gamma
52.901 93.288 100.329 90.00 96.69 90.00
method X-Ray Diffractionresolution 2.49 Å
ligand COA, GOL, NA, NH2 enzyme Transferase E.C.2.3.1 BRENDA
A, D, C, B

Primary referenceThe Molecular Basis for Histone H4- and H2A-Specific Amino-Terminal Acetylation by NatD., Magin RS, Liszczak GP, Marmorstein R, Structure. 2015 Feb 3;23(2):332-41. doi: 10.1016/j.str.2014.10.025. Epub 2015 Jan, 22. PMID:25619998
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (151 Kb) [Save to disk]
  • Biological Unit Coordinates (4u9w.pdb1.gz) 40 Kb
  • Biological Unit Coordinates (4u9w.pdb2.gz) 39 Kb
  • Biological Unit Coordinates (4u9w.pdb3.gz) 37 Kb
  • Biological Unit Coordinates (4u9w.pdb4.gz) 37 Kb
  • LPC: Ligand-Protein Contacts for 4U9W
  • CSU: Contacts of Structural Units for 4U9W
  • Structure Factors (506 Kb)
  • Retrieve 4U9W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4U9W from S2C, [Save to disk]
  • Re-refined 4u9w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4U9W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4U9W
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4U9W, from MSDmotif at EBI
  • Fold representative 4u9w from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4u9w_C] [4u9w] [4u9w_H] [4u9w_F] [4u9w_A] [4u9w_G] [4u9w_D] [4u9w_B] [4u9w_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4U9W
  • Community annotation for 4U9W at PDBWiki (http://pdbwiki.org)

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