4UJ4 Transport Protein date Apr 08, 2015
title Crystal Structure Of Human Rab11-Rabin8-Fip3
authors M.Vetter, E.Lorentzen
compound source
Molecule: Ras-Related Protein Rab-11a
Chain: A, D, G, J
Fragment: Gtpase Domain, Residues 4-186
Synonym: Rab-11,Yl8, Rab11a
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rab11a, Rab11
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_plasmid: Pet

Molecule: Rab-3a-Interacting Protein
Chain: B, E, H, K
Fragment: C-Terminal Domain, Unp Residues 286-476
Synonym: Rab3a-Interacting Protein,Rabin-3,Ssx2-Interacting
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rab3ip, Rabin8
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_plasmid: Pet

Molecule: Rab11 Family-Interacting Protein 3
Chain: C, F, I, L
Fragment: C-Terminal Domain, Residues 695-756
Synonym: Rab11-Fip3,Arfophilin-1,Ef Hands-Containing Rab-In Protein,Eferin,Mu-Mb-17.148;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rab11fip3, Arfo1, Kiaa0665
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_plasmid: Pet
symmetry Space Group: P 21 21 21
R_factor 0.252 R_Free 0.266
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.120 161.701 192.762 90.00 90.00 90.00
method X-Ray Diffractionresolution 4.20 Å
ligand GNP, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, J, D, G


F, C, I, L


K, E, B, H


Primary referenceStructure of Rab11-FIP3-Rabin8 reveals simultaneous binding of FIP3 and Rabin8 effectors to Rab11., Vetter M, Stehle R, Basquin C, Lorentzen E, Nat Struct Mol Biol. 2015 Aug 10. doi: 10.1038/nsmb.3065. PMID:26258637
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (515 Kb) [Save to disk]
  • Biological Unit Coordinates (4uj4.pdb1.gz) 255 Kb
  • Biological Unit Coordinates (4uj4.pdb2.gz) 255 Kb
  • Biological Unit Coordinates (4uj4.pdb3.gz) 255 Kb
  • LPC: Ligand-Protein Contacts for 4UJ4
  • CSU: Contacts of Structural Units for 4UJ4
  • Structure Factors (303 Kb)
  • Retrieve 4UJ4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4UJ4 from S2C, [Save to disk]
  • Re-refined 4uj4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4UJ4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4UJ4
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 4uj4 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4uj4_A] [4uj4_B] [4uj4_H] [4uj4_I] [4uj4] [4uj4_F] [4uj4_C] [4uj4_E] [4uj4_K] [4uj4_G] [4uj4_J] [4uj4_L] [4uj4_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4UJ4: [RAB ] by SMART
  • Other resources with information on 4UJ4
  • Community annotation for 4UJ4 at PDBWiki (http://pdbwiki.org)

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